Vitessce

Overview:

The Visual Integration Tool for Exploration of Spatial Single-Cell Experiments, or Vitessce, is a versatile tool designed to enable interactive visual analysis of multi-modal assay types that probe biological systems using WebGL technology. It allows visualization of large datasets stored in cloud object storage without the need for managing compute infrastructure. Vitessce can be integrated into React projects and offers a range of interactive views such as scatterplots, spatial+imaging plots, genome browser tracks, and statistical plots.

Features:

• Reusable Interactive Views: Including scatterplot, spatial+imaging plot, genome browser tracks, and control views.
• Integrative Multi-Modal Assay Analysis: Supports various assay types such as microscopy, genomics, and transcriptomics.
• Serverless Visualization: Ability to visualize large datasets stored in cloud object stores like AWS S3.
• Easy Integration: Can be seamlessly integrated into React projects.
• Development Support: Offers detailed guidelines for installation and development processes.
• Version Control: Utilizes changesets for managing changelogs and follows specific branch naming conventions for consistency.
• Testing and Deployment: Provides tools for testing, linting, and troubleshooting, along with deployment scripts for staging and publishing sites.

Installation:

To install Vitessce for development purposes, follow these steps:

• Install PNPM v9.5 and ensure NodeJS v18.6.0 and NPM 8.13.2 are available.
• Clone the project repository and navigate to its directory.
• Run the development server to enable live code editing.
• For detailed information, refer to internal dev-docs.

Summary:

Vitessce is a comprehensive tool tailored for exploring spatial single-cell experiments through interactive visualizations. With its focus on integrative multi-modal assays, serverless visualization capabilities, and seamless integration with React projects, Vitessce offers a valuable resource for researchers and developers in the biological sciences. The tool also provides robust support for development processes, version control, testing, and deployment, ensuring a smooth workflow for users.